mriconvert: how to convert fsl NIFTI to nii.gz format?

[Levi]

Hi Dorian,
   Thanks for your remind.And,could you tell me， how can i know which one is the average DWI image?
Best!
Wei Lei






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At 2014-06-18 02:02:09, "Dorian P." <alb.net at gmail.com> wrote:

Pay attention with Philips data. As far as I know it cannot save separate b0 and typically b0s are averaged into one volume. So typically the 34 volumes are 32 DWI + 1 b0 + 1 average DWI. The latter needs to be discarded and is not to be confused with a B0.



2014-06-17 13:47 GMT-04:00 Chuck <chuckt at uoregon.edu>:

Hello,

Dianne is correct. gzip is typically installed on any Linux distribution.

FYI, the output of .nii.gz files is a planned feature for MRIConvert. I do not have a firm time frame, but this will be included in a future 2.1.x release.

Chuck



On 06/17/2014 09:19 AM, Dianne Patterson wrote:

Convert them to *nii.gz images by running gzip on them...simple as that.


-Dianne



On Mon, Jun 16, 2014 at 8:11 PM, Levi <lw17022 at 163.com> wrote:



Hi,
  I have been convert some DTI images (from Philips) to fsl NIFTI format using MRIconvert v2.0.4 biuld 286.Our DTI secquence were recorde along 32 directions together with two b0 image.after convert i got 34 NIFTI images(in img/hdr format) and one .bvecs and one .bvals.Since i want to preprocessing these DTI data using FSL software,i am goning to need the NIFTI images in one *.nii.gz file(not in 34 *.img files).I wondering if i can just compress these images, say using "fslmerge", into one *.nii.gz or if these are other ways to do it? and if i could use fslmerge what order should i arrange these images?
Any help is greatly appreciated.
Best!
Wei Lei

   




|
姓名Wei Lei
lw17022 at 163.com
公司名称：
地址：Chengdu China
电话：
手机：+86 15928421303
Skype: wei.lei.7
|

扫描该二维码，可以将电子名片迅速保存到手机 使用帮助

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