mriconvert: mri_convert installation on mac os sierra

[Erik Olsson]

Hi


But my thought was to replace my mri_convert 1.179 (and it is installed within Freesurfer 5.1) with mri_convert 2.1.0.  (both mri_convert 2.1.0 and MriConvert were downloaded from the same website)


best regards
Erik

________________________________
Från: mriconvert-bounces at lists.uoregon.edu <mriconvert-bounces at lists.uoregon.edu> för Jolinda <jolinda at uoregon.edu>
Skickat: den 30 november 2017 22:37:28
Till: 'MRIConvert user's list'
Ämne: Re: mriconvert: mri_convert installation on mac os sierra

There may be some confusion here. MRIConvert (no underscore) is a different program than mri_convert that comes with Freesurfer. They were developed/named at about the same time, and neither of us ever bothered to rename our software.

J

From: mriconvert-bounces at lists.uoregon.edu [mailto:mriconvert-bounces at lists.uoregon.edu] On Behalf Of Erik Olsson
Sent: Thursday, November 30, 2017 10:41 AM
To: MRIConvert user's list <mriconvert at lists.uoregon.edu>
Subject: Re: mriconvert: mri_convert installation on mac os sierra


Hi there!



Thanks for your replies.



When I try gcc I get the message:
fatal error: 'wx/wxprec.h' file not
      found

so maybe my wxWidget 3.0.3 installation is faulty (however the wxprec.h file is in the PATH)



Do you know which mri_convert version the latest version of Freesurfer is using? It may be a "workaround" to update Freesurfer in order to get a newer mri_convert. My mri_convert version at the moment is 1.179.2.7 2012/09/05 and unfortunately it gets the orientation wrong for some of my dicomacquisitions when converting to nifti. The latest MriConvert app can handle these dicom aqcuisitions in a better way and that is why I want a late verion of mri_convert.



best regards

Erik

________________________________
Från: mriconvert-bounces at lists.uoregon.edu<mailto:mriconvert-bounces at lists.uoregon.edu> <mriconvert-bounces at lists.uoregon.edu<mailto:mriconvert-bounces at lists.uoregon.edu>> för Will Moore <william.e.moore.iii at gmail.com<mailto:william.e.moore.iii at gmail.com>>
Skickat: den 29 november 2017 18:31:45
Till: MRIConvert user's list
Ämne: Re: mriconvert: mri_convert installation on mac os sierra

I have successfully used gcc to compile mriconvert/mcverter on OS X (Leopard through Mavericks), but haven't tried on macOS (Sierra/High Sierra_.

~Will

On Nov 28, 2017, at 12:41 PM, Jolinda <jolinda at uoregon.edu<mailto:jolinda at uoregon.edu>> wrote:

I think I used gcc. Been a long time since I did any building for osx (I handed that off to someone who isn’t here any more and haven’t had time to go back to it).

J

From: mriconvert-bounces at lists.uoregon.edu<mailto:mriconvert-bounces at lists.uoregon.edu> [mailto:mriconvert-bounces at lists.uoregon.edu] On Behalf Of Erik Olsson
Sent: Tuesday, November 28, 2017 8:56 AM
To: mriconvert at lists.uoregon.edu<mailto:mriconvert at lists.uoregon.edu>
Subject: mriconvert: mri_convert installation on mac os sierra

Hi,
I wonder if you have any suggestion how to make a command line installation of mri_convert 2.1.0 on
Mac os sierra 10.12.3? (e.g what compiler to use)

best regards
Erik
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