mriconvert: mriconvert stops in ubuntu

[Kiyotaka Nemoto]

Hi,

It's confusing, but mri_convert is not function of MRI Convert.
It is provided by freesurfer.

Best regards,

Kiyotaka



2015-04-24 16:57 GMT+09:00 Shimono Masanori <mshimono at indiana.edu>:
> Dear MRIConvert team,
>
> Now, we are running "mri_convert" like [A], but, it stops after running
> 20min after processing like [B].
>
> Could you give comments how we can solve this issue?
> The enviroment is Ubuntu 14.04 on VirtualBox.
>
> We tested mriconvert ver. 2.0 and the newest one.
>
> If any more information is necessary, please ask easily.
> Sincerely.
> MS
>
> ----------------------------------------------------------------------------------------------------
> Ref. [A] --
> mri_convert --frame 0 -voxsize 1.000000 1.000000 1.000000 --input_volume
> /media/sf_H_DRIVE/CMP_data/project02_dsi/PH0005/tp1/NIPYPE/diffusion_pipeline/preprocessing_stage/eddy_correct/eddy_corrected.nii.gz
> --output_volume diffusion_first.nii.gz
>
> Ref. [B] --
> mri_convert --frame 0 -voxsize 1.000000 1.000000 1.000000 --input_volume
> /media/sf_H_DRIVE/CMP_data/project02_dsi/PH0005/tp1/NIPYPE/diffusion_pipeline/preprocessing_stage/eddy_correct/eddy_corrected.nii.gz
> --output_volume diffusion_first.nii.gz
> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
> reading from
> /media/sf_H_DRIVE/CMP_data/project02_dsi/PH0005/tp1/NIPYPE/diffusion_pipeline/preprocessing_stage/eddy_correct/eddy_corrected.nii.gz...
>
> TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, -1, 0)
> k_ras = (0, 0, 1)
> Reslicing using trilinear interpolation
>
>
>
> _______________________________________________
> mriconvert mailing list
> mriconvert at lists.uoregon.edu
> https://lists-prod.uoregon.edu/mailman/listinfo/mriconvert
>



-- 
Kiyotaka Nemoto, M.D., Ph.D.
Assistant Professor
Department of Psychiatry
Division of Clinical Medicine, Faculty of Medicine
University of Tsukuba
1-1-1Tennodai Tsukuba, Ibaraki 305-8575, Japan
E-mail: kiyotaka at nemotos.net